PDBsum entry 8y1c Go to PDB code:  Pore analysis for: 8y1c calculated with MOLE 2.0 PDB id 8y1c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.29 25.2 1.85 0.46 6.8 78 1 2 1 4 0 0 1   2 1.67 1.67 26.6 -0.57 -0.28 13.3 85 2 2 3 3 2 0 0  NAG 1 G NAG 2 G 3 1.26 1.26 53.5 -0.12 0.19 10.6 75 4 4 4 7 7 0 0   4 1.52 1.52 62.1 -0.47 -0.17 9.4 79 4 3 8 7 10 0 0   5 1.27 1.27 75.6 -1.38 -0.16 16.0 82 5 3 5 8 4 2 0   6 3.61 4.43 82.6 -1.63 -0.50 18.6 85 5 8 11 8 2 4 0   7 2.06 2.66 89.7 -1.67 -0.60 15.6 92 6 6 19 5 2 0 0   8 3.29 3.95 90.4 -1.58 -0.33 14.9 84 6 5 9 9 2 4 0   9 1.20 3.17 91.4 -0.52 -0.16 7.3 86 5 3 15 10 6 0 0   10 1.36 2.35 96.5 -1.38 -0.32 15.2 87 8 5 14 8 5 2 0   11 1.25 1.25 101.4 -0.35 0.03 12.9 80 6 4 7 10 9 0 0   12 1.32 2.63 112.3 -1.46 -0.39 19.1 89 12 7 18 13 3 3 0   13 1.28 1.29 111.5 -1.51 -0.42 14.3 85 5 8 11 11 2 5 0   14 1.26 1.27 115.1 -1.52 -0.38 18.2 81 4 9 8 12 2 7 0   15 1.25 2.91 117.9 -0.64 -0.07 10.8 82 6 4 15 12 12 2 0   16 2.05 2.68 118.7 -1.25 -0.40 15.5 92 7 4 18 8 3 0 0   17 1.27 1.31 127.2 -0.75 -0.03 12.3 78 7 7 11 15 9 4 0   18 3.63 4.45 132.7 -1.37 -0.41 18.2 86 7 8 15 11 4 4 0   19 1.24 2.62 144.4 -1.21 -0.29 15.4 88 9 5 17 11 7 2 0   20 3.10 4.02 140.5 -1.31 -0.30 15.7 85 8 5 13 12 4 4 0   21 1.54 1.54 143.7 -0.79 0.05 15.2 76 8 4 7 16 11 5 0   22 1.30 2.63 145.6 -1.55 -0.44 17.8 86 8 10 14 12 2 8 0   23 1.56 1.55 149.9 -1.01 -0.15 13.5 80 8 7 13 15 12 3 0   24 1.23 1.26 148.3 -0.86 -0.16 12.3 80 6 9 13 17 9 5 0   25 1.22 1.63 149.5 -1.20 -0.39 15.0 87 7 8 12 9 4 2 2  NAG 2001 A NAG 2 N MAN 3 N MAN 4 N MAN 5 N 26 1.52 1.53 159.4 -0.72 -0.11 14.2 80 8 6 12 15 11 3 0   27 1.24 1.25 161.6 -1.34 -0.37 15.3 86 7 8 15 14 4 5 0   28 1.26 1.52 164.4 -0.72 -0.16 12.7 82 10 3 14 12 7 3 0  NAG 1 E NAG 2 E NAG 2 P NAG 1 R NAG 2 R 29 1.34 1.51 213.5 -0.96 -0.11 17.6 79 11 7 12 16 7 7 1  NAG 1 E NAG 2 E NAG 2 P NAG 1 R NAG 2 R 30 1.30 1.60 216.4 -0.66 -0.04 15.5 81 12 5 15 13 9 4 0  NAG 1 E NAG 2 E NAG 2 P NAG 2 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.