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PDBsum entry 8y1a
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Pore analysis for: 8y1a calculated with  MOLE 2.0
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PDB id
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8y1a
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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24 pores,
coloured by radius |
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22 pores,
coloured by radius
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22 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.48 |
3.53 |
43.7 |
-2.11 |
-0.69 |
21.5 |
94 |
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4 |
4 |
11 |
4 |
0 |
1 |
0 |
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2 |
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2.50 |
3.61 |
59.2 |
-1.96 |
-0.66 |
18.2 |
91 |
7 |
6 |
13 |
5 |
0 |
3 |
0 |
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3 |
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2.72 |
2.95 |
61.4 |
-1.17 |
-0.43 |
17.2 |
85 |
5 |
6 |
6 |
7 |
0 |
6 |
0 |
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4 |
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2.21 |
2.21 |
66.1 |
-0.94 |
-0.25 |
16.1 |
89 |
5 |
3 |
8 |
4 |
2 |
0 |
0 |
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5 |
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2.97 |
3.13 |
67.9 |
-1.24 |
-0.32 |
17.8 |
85 |
8 |
2 |
6 |
6 |
4 |
0 |
0 |
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6 |
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2.76 |
3.08 |
71.2 |
-0.69 |
-0.08 |
13.1 |
82 |
8 |
2 |
9 |
7 |
9 |
0 |
0 |
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7 |
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2.76 |
3.04 |
83.0 |
-0.35 |
-0.02 |
11.0 |
80 |
6 |
3 |
9 |
9 |
7 |
1 |
0 |
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8 |
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2.23 |
2.21 |
85.3 |
-0.70 |
-0.14 |
12.8 |
83 |
7 |
2 |
12 |
7 |
5 |
1 |
0 |
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9 |
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1.27 |
1.37 |
86.4 |
-1.58 |
-0.29 |
18.5 |
77 |
5 |
5 |
5 |
4 |
4 |
2 |
2 |
NAG 1 H NAG 2 H NAG 1 J NAG 2 J
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10 |
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1.15 |
2.09 |
93.5 |
-1.41 |
-0.26 |
14.5 |
78 |
3 |
3 |
7 |
2 |
5 |
2 |
0 |
NAG 2009 C NAG 1 G NAG 2 G
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11 |
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2.50 |
2.73 |
100.8 |
-0.24 |
0.00 |
10.8 |
84 |
4 |
1 |
7 |
6 |
5 |
1 |
0 |
NAG 1 G NAG 2 G
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12 |
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2.21 |
2.21 |
102.6 |
-0.98 |
-0.36 |
16.1 |
88 |
8 |
8 |
12 |
8 |
2 |
4 |
0 |
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13 |
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3.32 |
3.32 |
104.7 |
-1.26 |
-0.32 |
16.9 |
84 |
11 |
5 |
13 |
12 |
6 |
1 |
0 |
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14 |
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2.50 |
2.73 |
105.7 |
-0.53 |
-0.01 |
13.0 |
83 |
6 |
2 |
6 |
7 |
5 |
1 |
0 |
NAG 1 G NAG 2 G
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15 |
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1.97 |
2.50 |
136.3 |
-1.04 |
-0.36 |
11.2 |
86 |
6 |
3 |
21 |
7 |
10 |
0 |
2 |
NAG 2011 A NAG 1 G NAG 2 G
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16 |
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2.66 |
3.15 |
136.4 |
-1.91 |
-0.56 |
15.5 |
87 |
11 |
6 |
23 |
7 |
3 |
5 |
0 |
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17 |
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1.86 |
2.36 |
144.2 |
-0.74 |
-0.10 |
11.3 |
82 |
9 |
3 |
18 |
8 |
13 |
0 |
2 |
NAG 2011 A NAG 1 G NAG 2 G
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18 |
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2.28 |
3.24 |
156.5 |
-1.98 |
-0.53 |
17.6 |
87 |
13 |
9 |
28 |
7 |
4 |
6 |
0 |
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19 |
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2.21 |
2.17 |
164.3 |
-1.79 |
-0.50 |
17.5 |
88 |
15 |
8 |
27 |
6 |
6 |
3 |
0 |
NAG 2013 C
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20 |
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2.80 |
3.10 |
185.4 |
-1.60 |
-0.36 |
16.5 |
83 |
17 |
7 |
26 |
10 |
12 |
5 |
0 |
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21 |
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1.31 |
1.28 |
317.0 |
-1.00 |
-0.50 |
8.8 |
87 |
16 |
6 |
48 |
21 |
14 |
5 |
0 |
NAG 2013 C NAG 1 K NAG 2 K NAG 1 N NAG 2 N MAN 3 N
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22 |
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1.14 |
2.46 |
27.0 |
0.87 |
0.27 |
2.7 |
80 |
1 |
0 |
5 |
4 |
2 |
1 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program