PDBsum entry 8xyd Go to PDB code:  Pore analysis for: 8xyd calculated with MOLE 2.0 PDB id 8xyd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.82 3.41 28.8 -2.52 -0.43 16.9 86 3 4 4 1 1 0 0   2 1.28 2.65 31.7 2.49 1.08 2.3 85 1 0 3 10 6 0 0  PFS 401 A 3 1.22 1.25 44.7 -1.72 -0.24 24.7 82 7 3 1 5 2 0 0   4 1.83 4.86 54.6 -1.92 -0.47 20.0 86 6 3 5 6 2 0 0   5 1.23 1.25 54.9 -0.43 -0.07 9.7 88 4 1 3 10 2 0 0   6 1.57 1.57 87.5 -1.51 -0.49 17.5 84 11 4 8 4 4 1 0   7 1.58 1.70 108.0 -1.29 -0.42 15.1 88 11 3 9 9 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.