PDBsum entry 8xyd Go to PDB code:  Tunnel analysis for: 8xyd calculated with MOLE 2.0 PDB id 8xyd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 3.28 30.3 0.78 0.38 6.8 79 2 1 2 5 5 0 1  PFS 401 A 2 1.24 1.24 32.8 0.24 0.21 8.1 81 2 2 3 5 5 0 1  PFS 401 A 3 1.28 2.00 33.4 0.34 0.21 8.2 80 2 2 3 6 5 0 1  PFS 401 A 4 1.30 2.66 40.7 0.20 0.43 11.5 71 3 2 4 4 8 0 1  PFS 401 A 5 1.29 1.29 43.2 0.07 0.35 11.2 74 3 3 5 4 8 0 1  PFS 401 A 6 1.27 2.21 43.8 0.00 0.32 11.7 73 3 3 5 5 8 0 1  PFS 401 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.