spacer
spacer

PDBsum entry 8xx7

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 8xx7 calculated with MOLE 2.0 PDB id
8xx7
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.56 2.72 56.5 -1.26 -0.32 22.1 87 6 6 5 5 2 0 1  
2 1.97 2.47 103.9 -2.19 -0.49 25.0 82 8 4 3 3 1 2 0  
3 2.56 2.84 55.7 -1.26 -0.25 20.4 85 8 5 5 6 3 0 1  
4 2.34 3.74 68.4 -1.03 -0.23 17.7 80 8 4 5 4 4 1 3  
5 1.54 1.55 94.9 -1.45 -0.40 22.0 82 10 7 6 4 2 1 2  
6 1.55 1.54 116.3 -1.53 -0.34 24.9 85 12 10 7 7 2 0 1  
7 1.98 2.40 118.9 -1.99 -0.51 22.0 82 8 4 3 4 1 2 0  
8 2.11 2.37 38.6 -1.83 -0.30 24.4 79 5 6 3 7 3 2 0  
9 1.28 1.28 39.7 -1.13 -0.57 10.7 92 1 3 8 4 2 1 0  
10 1.66 2.29 39.8 -1.83 -0.30 24.3 78 5 6 2 7 3 2 0  
11 1.19 1.21 42.5 -1.20 -0.47 17.6 80 4 3 3 4 0 1 2  
12 1.27 1.27 42.4 -0.27 -0.35 8.3 92 1 3 8 6 2 1 0  
13 1.22 1.22 45.3 -0.42 -0.29 14.2 80 4 3 2 6 0 1 2  
14 1.29 1.29 53.4 -1.13 -0.29 15.3 80 4 6 8 6 5 3 0  
15 1.25 1.45 55.7 -1.65 -0.67 16.1 91 2 4 7 4 0 2 0  
16 1.20 1.20 56.3 -1.19 -0.21 19.4 73 7 6 3 6 3 3 2  
17 1.25 1.41 76.7 -1.29 -0.32 16.7 78 5 7 7 7 3 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer