PDBsum entry 8x0d

Pore analysis for: 8x0d calculated with

MOLE 2.0

PDB id

8x0d

Pores calculated on whole structure

Pores calculated excluding ligands

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8 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

2.74

32.0

-1.58

-0.38

16.9

81

2

5

4

3

2

0

0

2

1.49

4.21

105.0

-2.40

-0.53

31.7

86

13

6

6

5

1

0

0

3

1.22

2.34

187.3

-1.45

-0.26

18.9

80

16

12

15

10

8

0

2

4

1.74

1.74

29.2

0.04

0.12

11.4

79

1

3

2

3

2

1

0

5

1.27

1.31

30.9

0.15

0.41

3.7

69

1

1

1

4

3

2

0

6

1.46

1.83

41.1

0.41

0.29

7.7

79

2

2

1

9

3

2

0

7

2.19

2.49

79.6

0.18

0.28

9.5

77

1

3

2

11

6

2

0

8

1.29

1.35

83.4

0.91

0.42

7.7

76

2

1

3

14

5

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.