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PDBsum entry 8ww2

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8ww2 calculated with MOLE 2.0 PDB id
8ww2
Pores calculated on whole structure Pores calculated excluding ligands

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18 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.29 42.6 -1.03 -0.29 14.6 85 6 1 4 5 0 0 0  
2 1.86 3.78 46.6 -1.39 -0.46 12.8 82 6 2 7 2 3 1 3  
3 1.24 2.34 49.1 0.87 0.59 5.1 68 1 0 0 8 6 4 0  OLA 601 R
4 1.99 2.12 59.7 -1.09 -0.04 20.4 79 5 3 3 5 3 0 1  
5 2.46 2.94 69.3 -1.13 -0.29 16.7 84 8 3 2 7 2 1 0  
6 1.76 1.90 70.6 -1.03 -0.26 18.9 81 9 5 5 5 3 0 1  
7 1.23 1.29 74.0 -0.87 -0.36 12.9 81 5 5 8 7 2 0 1  
8 1.26 1.30 87.9 -0.65 -0.31 11.8 81 8 3 6 8 3 0 0  
9 1.25 2.16 88.4 0.92 0.46 8.7 76 3 2 1 15 5 2 0  OLA 601 R Y01 602 R PLM 603 R
10 1.69 4.00 88.9 -1.62 -0.48 16.4 85 8 5 11 4 2 0 1  
11 2.29 3.08 89.6 1.10 0.53 9.7 77 4 2 1 18 7 0 0  OLA 601 R Y01 602 R PLM 603 R
12 1.81 1.95 94.8 -1.38 -0.45 15.1 85 10 2 8 4 3 0 0  
13 1.88 3.82 108.6 -1.19 -0.29 17.6 83 10 6 6 5 2 1 1  
14 2.13 2.13 111.5 -1.48 -0.37 18.3 80 9 4 3 7 3 0 0  
15 1.78 1.91 124.8 -0.89 -0.32 16.2 83 12 5 5 5 3 1 0  
16 1.15 1.98 130.0 -1.76 -0.24 22.0 75 9 6 4 4 5 1 2  
17 1.40 1.45 129.7 -1.94 -0.41 18.9 82 12 5 7 7 3 2 0  
18 1.22 1.30 135.3 -0.76 -0.39 11.3 84 9 5 8 7 2 1 0  
19 1.77 1.93 140.2 -0.82 -0.30 16.7 83 14 8 5 10 5 1 0  
20 2.54 2.77 142.2 -1.33 -0.49 14.0 87 11 4 10 3 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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