PDBsum entry 8wkz

Tunnel analysis for: 8wkz calculated with

MOLE 2.0

PDB id

8wkz

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.25

26.9

-0.13

-0.01

19.5

76

2

5

0

5

3

0

0

CA 2101 A 4J2 5 B

2

1.16

2.57

28.3

-1.34

-0.20

25.8

80

2

5

1

4

1

0

1

CA 2101 A 4J2 5 B

3

1.24

1.24

30.0

-0.40

0.09

20.6

76

2

5

1

5

3

0

0

CA 2101 A 4J2 5 B

4

1.19

1.19

30.2

0.87

0.34

5.6

76

0

2

2

5

5

2

0

4J2 5 B

5

1.20

1.19

31.7

1.21

0.55

5.2

77

0

2

2

6

4

2

0

4J2 5 B

6

1.19

1.19

33.2

0.36

0.32

8.1

77

1

2

3

5

4

2

1

4J2 5 B

7

1.36

1.36

19.0

0.93

0.24

12.1

91

3

2

1

9

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.