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PDBsum entry 8wc9

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8wc9 calculated with MOLE 2.0 PDB id
8wc9
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.92 2.47 28.7 -1.65 -0.41 18.9 83 5 2 3 1 1 1 0  
2 1.21 1.21 37.0 0.83 0.23 3.5 79 0 1 1 5 5 2 0  VMT 401 R
3 1.25 1.91 38.6 0.60 0.31 5.7 80 0 2 3 6 4 1 1  VMT 401 R
4 2.98 3.24 41.5 -2.06 -0.50 22.0 79 6 3 4 1 2 1 0  
5 1.26 1.48 45.3 0.07 0.12 8.3 75 1 2 2 5 4 1 2  VMT 401 R
6 1.11 1.11 88.0 -0.93 -0.47 7.7 79 1 2 4 5 4 3 0  
7 1.57 2.06 90.7 -0.76 -0.32 8.9 79 1 2 4 7 2 2 1  
8 1.19 1.26 100.2 -0.34 0.14 10.4 81 6 3 11 13 8 2 0  VMT 401 R
9 1.25 1.47 104.9 -0.66 -0.17 7.9 78 2 5 5 7 6 3 1  VMT 401 R
10 1.19 1.29 119.6 -0.78 -0.01 12.6 78 7 5 11 12 8 2 1  VMT 401 R
11 1.32 1.65 150.0 -0.51 -0.08 15.4 84 9 11 8 15 7 0 0  
12 1.33 1.33 223.0 -0.40 -0.18 13.0 82 11 12 12 19 11 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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