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PDBsum entry 8wc4

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8wc4 calculated with MOLE 2.0 PDB id
8wc4
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 1.52 27.2 -0.97 -0.02 18.2 73 3 3 1 3 2 1 2  
2 1.21 2.63 33.9 -0.15 0.24 12.3 70 2 2 1 4 4 1 3  VMT 401 R
3 1.23 1.23 34.4 -0.18 0.09 11.5 70 2 1 0 4 7 2 2  VMT 401 R
4 1.22 1.22 38.2 0.47 0.15 4.8 76 1 2 1 6 6 2 0  VMT 401 R
5 3.16 4.54 67.7 -2.08 -0.47 19.9 84 6 1 5 2 3 2 0  
6 1.38 1.53 86.2 -1.80 -0.37 18.1 83 11 3 9 5 6 1 0  
7 1.21 2.58 89.4 -0.01 -0.13 7.1 73 1 2 4 5 4 1 2  
8 1.16 1.65 92.3 -0.77 0.13 17.3 79 7 1 4 10 6 1 0  
9 1.36 1.52 93.3 -1.26 -0.31 14.5 87 5 4 10 9 6 0 0  
10 1.19 1.57 100.3 -0.44 0.03 13.2 79 6 1 3 10 6 2 0  
11 1.21 1.21 136.1 -0.25 0.00 11.8 85 10 1 7 13 8 1 0  VMT 401 R
12 1.24 1.23 169.4 -0.17 -0.05 9.6 86 7 2 11 16 9 2 0  VMT 401 R
13 1.31 1.31 251.8 -1.07 -0.23 13.3 87 11 6 17 19 9 2 0  VMT 401 R

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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