PDBsum entry 8w3b Go to PDB code:  Tunnel analysis for: 8w3b calculated with MOLE 2.0 PDB id 8w3b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.64 22.5 1.19 0.27 10.2 78 1 2 1 8 1 0 0  TZ0 801 A 2 1.55 1.55 31.1 -0.94 -0.22 27.3 77 4 3 0 6 1 0 0  TZ0 801 A 3 1.55 1.55 41.2 -1.52 -0.46 29.2 80 4 6 0 7 1 0 0  TZ0 801 A 4 1.56 1.58 24.2 -1.30 -0.42 28.0 78 3 4 0 6 1 0 0  TZ0 801 D 5 1.60 1.68 27.5 0.65 0.11 12.9 76 1 2 1 8 1 0 1  TZ0 801 D 6 1.32 1.32 32.0 -1.31 -0.42 27.8 86 2 3 2 5 1 0 0  TZ0 801 D 7 1.61 1.70 33.6 0.34 0.00 14.4 79 2 2 1 9 1 0 0  TZ0 801 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.