PDBsum entry 8vqj Go to PDB code:  Pore analysis for: 8vqj calculated with MOLE 2.0 PDB id 8vqj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.41 27.0 -1.60 -0.38 21.1 74 6 2 0 3 2 1 0   2 1.16 1.69 34.7 1.62 0.83 5.1 76 1 1 0 10 2 0 0   3 1.69 1.87 35.6 -0.10 0.06 15.7 79 3 5 0 8 2 1 0  MG 301 E 4 1.33 1.48 59.9 -1.02 -0.22 16.0 78 6 6 1 7 3 2 0   5 1.14 1.55 76.2 -0.79 -0.19 16.9 76 4 6 2 6 5 2 0   6 1.32 1.49 87.2 -1.65 -0.45 18.7 81 7 6 6 5 3 0 0   7 1.17 3.76 107.3 -1.95 -0.34 32.9 78 11 11 2 7 1 0 0  PMR 601 B 8 1.16 1.48 110.9 -1.31 -0.37 18.1 80 7 7 7 8 6 3 0   9 2.45 2.62 151.1 -2.14 -0.51 29.9 81 15 15 3 4 3 2 0   10 1.19 3.75 165.4 -0.63 0.01 16.9 76 11 8 4 18 5 8 1  PMR 601 B 11 1.36 1.48 166.4 -0.74 -0.06 16.8 78 9 7 3 15 4 7 0   12 1.33 1.46 202.6 -1.76 -0.40 24.1 81 17 15 4 8 4 2 0   13 1.24 1.78 398.8 -1.78 -0.41 27.6 81 32 27 4 18 5 4 0   14 1.19 2.86 417.7 -1.69 -0.38 27.8 82 31 25 7 25 3 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.