PDBsum entry 8vqb Go to PDB code:  Pore analysis for: 8vqb calculated with MOLE 2.0 PDB id 8vqb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.76 4.72 35.6 -0.85 -0.18 22.9 80 6 7 0 5 0 2 0   2 2.76 4.72 35.6 -0.85 -0.18 22.9 80 6 7 0 5 0 2 0   3 2.76 4.71 36.0 -0.98 -0.22 23.0 80 6 7 0 5 0 2 0   4 1.58 1.93 107.1 -0.39 -0.17 10.4 87 4 3 6 8 0 1 0   5 1.60 1.77 111.4 -0.33 -0.16 10.3 86 4 3 6 9 0 1 0   6 1.60 1.77 111.4 -0.33 -0.16 10.3 86 4 3 6 9 0 1 0   7 1.57 1.93 126.0 -1.25 -0.56 7.8 90 6 3 12 7 0 0 0   8 1.55 1.93 126.6 -1.31 -0.57 7.6 90 6 3 11 7 0 0 0   9 1.56 2.00 128.3 -1.35 -0.54 9.3 89 6 3 12 7 0 1 0   10 1.74 1.77 154.0 -1.91 -0.56 20.6 82 20 18 12 12 2 2 0   11 1.56 1.56 177.9 -1.44 -0.38 20.7 81 17 16 8 15 2 3 0   12 1.64 1.64 178.4 -1.52 -0.37 21.6 81 17 16 8 15 2 3 0   13 1.61 1.61 178.5 -1.47 -0.39 20.9 81 17 17 8 15 2 2 0   14 1.18 1.25 306.2 -1.66 -0.53 14.1 85 12 5 19 10 2 2 0  NAG 1302 B NAG 1 H NAG 2 H NAG 1 M NAG 2 M 15 1.19 1.25 313.5 -1.45 -0.48 13.3 84 12 5 19 11 2 3 0  NAG 1302 A NAG 1 D NAG 2 D NAG 1 I NAG 2 I 16 1.18 1.25 313.8 -1.47 -0.48 13.3 84 12 5 19 11 2 3 0  NAG 1302 C NAG 1 E NAG 2 E NAG 1 L NAG 2 L Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.