PDBsum entry 8vms Go to PDB code:  Tunnel analysis for: 8vms calculated with MOLE 2.0 PDB id 8vms Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.08 1.71 26.2 -1.82 -0.60 16.2 89 2 0 3 0 1 0 0  DA 512 D DA 513 D DG 514 D DA 515 D DG 516 D 2 1.27 1.27 16.7 -1.23 -0.68 12.7 80 2 0 0 0 0 1 0  DT 402 C DG 403 C DA 404 C 3 1.31 1.31 23.9 -1.86 -0.40 27.2 90 3 0 0 2 0 0 0  DT 402 C DG 403 C DA 404 C DG 518 D DT 519 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.