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PDBsum entry 8vmd
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Pore analysis for: 8vmd calculated with  MOLE 2.0
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PDB id
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8vmd
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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19 pores,
coloured by radius |
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23 pores,
coloured by radius
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23 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.58 |
1.58 |
32.2 |
-0.79 |
-0.49 |
16.2 |
69 |
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3 |
6 |
1 |
3 |
0 |
3 |
0 |
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2 |
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1.30 |
1.47 |
38.2 |
-1.98 |
-0.40 |
19.2 |
80 |
4 |
2 |
4 |
3 |
1 |
2 |
0 |
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3 |
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1.91 |
1.91 |
39.9 |
-2.10 |
-0.66 |
17.5 |
86 |
5 |
2 |
8 |
3 |
1 |
1 |
0 |
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4 |
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1.30 |
1.47 |
73.0 |
-2.06 |
-0.51 |
20.0 |
82 |
11 |
5 |
10 |
5 |
2 |
8 |
0 |
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5 |
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1.18 |
1.20 |
82.9 |
-1.01 |
-0.16 |
21.5 |
78 |
12 |
5 |
4 |
10 |
4 |
4 |
0 |
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6 |
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1.18 |
1.20 |
84.8 |
-1.02 |
-0.14 |
18.6 |
81 |
16 |
0 |
5 |
14 |
6 |
8 |
0 |
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7 |
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1.20 |
1.20 |
90.5 |
-1.13 |
-0.24 |
16.5 |
81 |
13 |
1 |
12 |
11 |
3 |
7 |
0 |
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8 |
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2.10 |
2.36 |
91.9 |
-2.40 |
-0.65 |
29.3 |
84 |
10 |
13 |
6 |
7 |
0 |
2 |
0 |
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9 |
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2.54 |
2.69 |
106.4 |
-1.43 |
-0.46 |
22.5 |
85 |
8 |
11 |
9 |
9 |
0 |
3 |
0 |
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10 |
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1.41 |
3.57 |
116.5 |
-1.80 |
-0.44 |
21.4 |
79 |
10 |
7 |
15 |
4 |
4 |
3 |
0 |
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11 |
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1.71 |
3.53 |
124.5 |
-2.15 |
-0.37 |
27.0 |
80 |
19 |
7 |
9 |
6 |
4 |
5 |
0 |
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12 |
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1.34 |
2.31 |
160.1 |
-1.95 |
-0.63 |
16.9 |
79 |
9 |
8 |
16 |
9 |
2 |
8 |
0 |
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13 |
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1.21 |
1.21 |
162.6 |
-1.28 |
-0.27 |
21.0 |
84 |
23 |
8 |
12 |
19 |
3 |
8 |
0 |
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14 |
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1.95 |
1.94 |
162.2 |
-2.36 |
-0.59 |
26.8 |
84 |
21 |
14 |
15 |
14 |
1 |
10 |
0 |
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15 |
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1.76 |
2.99 |
169.3 |
-1.81 |
-0.40 |
25.4 |
83 |
19 |
13 |
13 |
12 |
3 |
4 |
0 |
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16 |
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1.78 |
2.23 |
176.8 |
-1.12 |
-0.42 |
13.4 |
84 |
12 |
8 |
19 |
23 |
1 |
15 |
0 |
NAP 2601 A
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17 |
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1.76 |
2.99 |
247.8 |
-1.93 |
-0.55 |
21.9 |
81 |
16 |
16 |
17 |
15 |
5 |
9 |
0 |
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18 |
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1.18 |
1.67 |
310.9 |
-1.42 |
-0.33 |
18.9 |
82 |
33 |
20 |
25 |
42 |
6 |
19 |
0 |
NAP 2601 A
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19 |
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1.22 |
1.49 |
26.2 |
1.25 |
0.36 |
11.3 |
76 |
3 |
3 |
1 |
12 |
0 |
1 |
0 |
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20 |
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1.22 |
1.45 |
28.7 |
0.92 |
0.25 |
8.4 |
78 |
2 |
0 |
2 |
14 |
0 |
1 |
0 |
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21 |
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1.21 |
2.80 |
31.2 |
1.64 |
0.60 |
11.1 |
69 |
3 |
4 |
0 |
11 |
0 |
2 |
1 |
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22 |
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1.19 |
2.78 |
32.7 |
2.30 |
0.71 |
3.6 |
75 |
2 |
1 |
1 |
14 |
0 |
3 |
1 |
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23 |
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1.21 |
2.79 |
33.8 |
1.28 |
0.50 |
8.7 |
75 |
2 |
1 |
2 |
11 |
0 |
2 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program