PDBsum entry 8vmc Go to PDB code:  Pore analysis for: 8vmc calculated with MOLE 2.0 PDB id 8vmc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 33 pores, coloured by radius 33 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.95 3.11 28.4 -0.78 -0.17 19.5 80 7 2 3 5 1 3 0   2 1.96 1.97 41.0 -2.14 -0.68 20.1 86 7 2 7 2 1 3 0   3 1.58 1.72 51.4 -1.20 -0.30 22.2 76 4 8 6 7 3 2 1   4 1.41 1.43 54.7 -0.25 -0.22 10.6 80 3 3 5 8 0 5 0   5 1.42 1.43 70.0 -0.90 -0.43 14.3 82 8 4 7 10 1 7 0   6 1.21 1.39 75.4 -1.10 -0.47 16.5 79 8 11 7 7 1 8 0   7 2.11 2.29 82.1 -1.60 -0.16 23.4 79 11 2 6 9 3 2 0  NDP 2601 A 8 2.10 2.26 87.5 -1.68 -0.37 22.3 80 10 8 8 5 2 3 0   9 2.51 2.50 88.1 -2.21 -0.48 27.1 82 12 8 9 8 1 6 0   10 2.57 2.51 92.7 -2.45 -0.39 27.5 84 18 4 9 9 1 9 0   11 2.12 2.29 94.8 -1.81 -0.37 24.9 79 7 6 7 6 3 0 0  NDP 2601 A 12 2.01 2.17 101.1 -2.47 -0.38 28.5 80 17 3 8 5 2 6 0   13 2.30 3.53 103.2 -1.99 -0.36 24.9 77 13 8 8 8 3 3 0   14 2.08 2.30 106.3 -1.91 -0.24 25.5 82 15 3 8 10 2 6 0  NDP 2601 A 15 2.07 2.27 106.5 -1.51 -0.22 21.2 81 11 4 8 7 3 3 0  NDP 2601 A 16 2.11 2.29 105.8 -2.02 -0.38 20.3 83 11 0 9 7 2 2 0  NDP 2601 A 17 1.17 2.12 112.8 -0.33 -0.14 14.8 78 8 5 5 17 2 11 1   18 2.25 3.24 116.2 -2.25 -0.49 22.9 80 13 6 10 6 2 2 0   19 1.66 1.82 123.7 -0.90 -0.32 16.0 85 6 10 11 18 0 8 0  NDP 2602 B 20 1.83 2.70 127.0 -1.18 -0.36 15.8 84 8 6 17 14 4 8 0  NDP 2602 B 21 2.08 2.85 128.2 -2.09 -0.42 20.7 82 17 5 15 6 2 5 0   22 2.20 2.90 128.5 -2.30 -0.42 24.2 83 20 4 13 9 1 8 0   23 1.54 1.43 135.4 -1.40 -0.36 19.4 78 8 10 10 10 2 7 0   24 1.29 1.86 140.7 -1.18 -0.40 13.0 83 10 4 17 20 1 13 0  NDP 2602 B 25 1.81 2.68 139.3 -1.08 -0.32 14.0 85 9 3 11 14 1 8 0  NDP 2602 B 26 1.52 1.43 147.1 -1.27 -0.25 17.4 80 13 7 12 10 2 9 0   27 1.33 2.06 177.7 -1.54 -0.47 16.9 79 12 12 20 16 1 12 0   28 1.30 1.90 177.5 -1.72 -0.50 15.5 78 12 7 26 13 5 12 1   29 1.33 2.05 193.3 -1.72 -0.49 15.5 79 15 5 20 12 2 13 0   30 0.98 1.02 273.5 -0.74 -0.17 15.8 78 14 12 15 20 6 11 1  NDP 2601 A 31 1.29 1.43 27.5 0.39 0.06 10.0 84 2 1 2 9 0 1 0   32 1.31 1.33 105.3 -1.41 -0.32 21.5 78 6 6 4 5 1 7 0   33 1.28 1.33 134.0 -0.83 -0.12 19.1 80 9 6 5 13 3 5 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.