PDBsum entry 8vjs Go to PDB code:  Pore analysis for: 8vjs calculated with MOLE 2.0 PDB id 8vjs Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.46 33.9 0.16 -0.25 5.8 88 0 1 4 7 1 1 0   2 1.24 1.45 38.4 0.21 -0.17 7.6 91 1 1 5 9 1 0 0   3 2.16 2.34 42.6 -0.61 -0.49 4.8 85 2 0 7 4 2 1 0   4 1.25 1.49 48.9 0.22 -0.18 6.4 92 1 2 6 8 1 0 0   5 1.58 3.64 51.1 -0.33 -0.12 8.6 83 1 1 4 5 2 3 0   6 3.17 4.11 52.0 -1.13 -0.10 8.1 74 2 1 2 3 3 3 0   7 1.78 2.38 52.9 -0.82 -0.59 13.3 94 2 5 3 5 1 1 0   8 2.38 3.32 58.3 -1.06 -0.58 8.8 95 0 4 7 3 1 0 0   9 2.59 2.59 66.6 -0.41 -0.38 8.0 92 1 3 7 8 1 0 0   10 1.28 1.28 78.7 -1.11 -0.53 14.8 81 2 4 6 3 1 2 0   11 1.26 1.26 82.8 -0.22 -0.42 10.3 88 3 4 7 11 0 2 0   12 2.18 2.34 84.8 -0.71 -0.52 6.8 92 2 4 12 7 2 0 0   13 1.26 1.24 97.0 0.60 0.28 6.5 76 2 3 2 13 3 6 1   14 1.17 1.17 101.7 -0.28 -0.15 9.3 83 2 6 5 8 2 5 1   15 1.41 1.45 103.5 -1.42 -0.50 13.5 90 4 5 5 3 2 3 0   16 1.42 1.47 116.2 -1.00 -0.36 10.3 88 3 5 8 5 3 5 0   17 1.27 1.25 119.6 -0.64 -0.30 10.2 77 4 5 6 6 3 4 1   18 2.23 3.82 136.8 0.65 0.29 6.1 81 3 5 6 19 5 5 0   19 1.18 1.50 137.4 -0.15 -0.02 8.4 77 4 7 5 14 6 5 0   20 1.81 3.17 141.5 -0.16 -0.09 8.9 87 3 8 9 14 3 4 0   21 1.17 1.50 141.5 -0.91 -0.23 11.4 72 5 7 5 8 5 7 1   22 1.27 1.50 142.5 -0.40 -0.04 9.0 74 5 5 7 16 7 10 0   23 1.87 1.90 147.5 -0.68 -0.31 10.6 83 4 9 10 9 4 6 0   24 2.13 3.32 160.1 0.03 0.05 7.6 76 5 6 7 14 5 9 0   25 1.43 1.50 278.0 -0.47 -0.12 11.4 79 8 10 12 23 7 11 0   26 1.16 1.16 322.5 -1.17 -0.34 13.4 77 11 14 15 19 9 12 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.