PDBsum entry 8v4l Go to PDB code:  Pore analysis for: 8v4l calculated with MOLE 2.0 PDB id 8v4l Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.08 2.08 36.7 -1.98 -0.62 25.4 85 6 3 3 3 2 0 0   2 3.26 3.53 52.6 -3.15 -0.54 40.6 88 10 7 4 1 0 0 0   3 1.15 1.53 58.3 -1.98 -0.53 23.0 80 4 6 4 4 2 3 0   4 2.33 3.06 64.4 -2.87 -0.61 32.6 82 10 9 3 2 0 0 0   5 1.17 1.37 69.0 -1.29 -0.24 20.0 82 5 4 5 6 1 1 0   6 1.16 1.19 80.1 -1.75 -0.61 23.4 84 7 7 3 5 0 4 0   7 1.49 2.84 93.3 -2.00 -0.54 24.4 81 7 8 2 2 2 1 0   8 1.20 1.39 139.8 -2.09 -0.60 24.6 85 12 12 12 7 0 2 0  MG 501 A GTP 502 A 9 1.19 1.54 163.3 -2.54 -0.49 31.8 83 17 17 8 7 2 3 0   10 1.19 1.20 172.1 -2.17 -0.56 26.2 85 16 14 12 9 0 2 0  MG 501 A GTP 502 A 11 1.17 1.17 187.4 -2.08 -0.63 22.2 83 15 18 14 9 2 5 0  MG 501 A GTP 502 A 12 1.14 1.19 212.1 -1.67 -0.45 20.5 83 14 17 12 13 3 6 0   13 1.15 1.11 259.3 -1.64 -0.53 18.9 85 17 17 20 15 1 5 0  MG 501 A GTP 502 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.