PDBsum entry 8v0f

Pore analysis for: 8v0f calculated with

MOLE 2.0

PDB id

8v0f

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.91

1.95

27.0

-0.15

0.25

21.0

77

3

2

1

4

2

0

0

2

1.57

1.57

30.4

-2.17

-0.71

22.2

86

4

2

3

1

0

0

0

3

1.48

1.96

46.3

-1.65

-0.41

15.2

77

2

4

5

1

3

1

0

4

1.78

1.90

46.1

-0.88

-0.07

20.8

78

4

3

2

2

3

1

0

5

1.62

1.90

53.2

-1.31

-0.15

18.2

76

3

4

5

5

3

2

0

6

1.95

2.40

54.8

-1.67

-0.29

13.2

81

2

2

8

3

1

3

0

7

1.45

1.83

58.1

-1.53

-0.11

21.6

73

5

5

4

2

5

2

0

8

1.55

1.74

83.1

-1.50

-0.13

19.2

73

4

7

7

4

6

4

0

9

1.37

2.14

89.6

-0.82

-0.04

18.4

76

10

4

5

6

4

2

1

10

1.28

1.25

94.5

-0.74

-0.01

17.2

77

10

4

5

7

4

2

1

11

1.29

1.63

118.3

-1.66

-0.28

23.5

81

9

11

11

8

4

3

0

12

1.22

1.41

126.3

-1.20

-0.19

22.7

82

14

8

9

10

2

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.