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PDBsum entry 8ubc
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Pore analysis for: 8ubc calculated with  MOLE 2.0
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PDB id
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8ubc
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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7 pores,
coloured by radius |
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7 pores,
coloured by radius
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7 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.43 |
1.49 |
34.2 |
-0.85 |
-0.14 |
16.6 |
87 |
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5 |
0 |
2 |
4 |
1 |
0 |
0 |
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A 123 H U 47 I A 48 I G 53 I
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2 |
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2.20 |
2.20 |
38.5 |
-1.28 |
-0.27 |
12.6 |
77 |
3 |
1 |
3 |
2 |
2 |
1 |
0 |
A 123 H U 47 I A 48 I U 51 I G 52 I G 53 I
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3 |
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2.65 |
3.37 |
50.2 |
-1.37 |
-0.62 |
17.0 |
90 |
4 |
1 |
0 |
1 |
0 |
0 |
0 |
A 123 H A 48 I G 53 I G 93 I U 94 I U 95 I C 96 I
G 97 I G 98 I A 100 I G 131 I G 132 I
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4 |
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1.43 |
1.51 |
52.8 |
-1.39 |
-0.25 |
17.0 |
82 |
6 |
1 |
1 |
4 |
1 |
1 |
0 |
U 47 I A 48 I G 49 I G 53 I
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5 |
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1.55 |
1.83 |
60.9 |
-0.78 |
-0.32 |
13.1 |
80 |
5 |
1 |
3 |
5 |
2 |
1 |
0 |
U 124 H C 125 H A 126 H C 127 H C 128 H G 49 I G
50 I U 51 I G 52 I
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6 |
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2.55 |
2.69 |
28.0 |
-2.76 |
-0.84 |
35.1 |
77 |
8 |
5 |
1 |
0 |
0 |
0 |
0 |
G 5 I C 6 I C 8 I U 9 I G 10 I G 21 I C 23 I G 31
I C 32 I U 33 I
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7 |
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1.16 |
1.16 |
36.8 |
-2.49 |
-0.71 |
34.9 |
78 |
8 |
5 |
0 |
1 |
0 |
0 |
0 |
G 5 I C 6 I C 8 I U 25 I G 27 I C 28 I
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program