PDBsum entry 8u5c Go to PDB code:  Pore analysis for: 8u5c calculated with MOLE 2.0 PDB id 8u5c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.30 31.9 0.33 0.23 10.8 79 1 2 4 6 2 1 0   2 2.36 3.17 35.2 2.34 0.93 2.5 70 1 0 0 12 7 0 1  Y01 900 F Y01 901 F 3 2.21 2.21 38.3 2.10 0.90 3.5 70 2 0 0 10 7 0 1  Y01 900 E Y01 901 E 4 2.37 3.08 42.8 2.94 1.09 0.5 71 0 0 0 14 8 1 1  Y01 900 F Y01 901 F 5 2.40 3.05 43.9 2.95 1.13 0.5 73 0 0 0 14 7 1 1  Y01 900 E Y01 901 E 6 2.41 3.18 54.4 1.48 0.60 5.7 72 4 0 1 12 8 0 1  Y01 900 E Y01 901 E 7 3.29 4.40 55.7 0.91 0.46 10.9 78 5 1 2 9 3 0 0   8 2.38 3.18 56.0 1.30 0.57 6.8 72 4 0 1 12 8 0 1  Y01 900 F Y01 901 F 9 2.06 2.20 66.8 0.98 0.37 12.2 80 4 2 2 14 2 1 0  Y01 900 E Y01 901 E 10 2.06 2.20 74.1 0.59 0.29 13.4 82 6 2 3 13 2 0 0   11 1.68 2.69 75.7 1.11 0.45 9.8 82 6 1 3 13 1 1 0  Y01 900 F Y01 901 F 12 1.61 2.73 36.3 -1.09 -0.03 16.1 88 4 0 3 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.