PDBsum entry 8trd Go to PDB code:  Pore analysis for: 8trd calculated with MOLE 2.0 PDB id 8trd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   29 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 2.15 30.4 0.51 0.03 5.7 78 2 0 2 10 0 1 0   2 1.67 1.83 36.5 -2.92 -0.41 30.1 81 6 3 3 3 2 0 0   3 1.12 1.70 62.6 -0.07 -0.06 11.2 76 4 2 3 10 0 2 0   4 1.54 1.68 118.8 -2.74 -0.47 30.0 82 14 8 8 2 4 2 0   5 1.59 1.90 147.9 -1.78 -0.29 24.2 80 13 8 6 7 3 2 0   6 2.03 2.03 25.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   7 1.86 1.86 26.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   8 2.44 2.44 27.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   9 1.95 1.95 27.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   10 2.00 2.00 28.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   11 2.27 2.27 29.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   12 2.27 2.27 29.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   13 2.24 2.24 30.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   14 2.03 2.03 31.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   15 2.08 2.08 32.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   16 2.09 2.09 33.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   17 2.29 2.29 35.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   18 2.04 2.04 37.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   19 1.89 1.89 39.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   20 2.56 2.56 41.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   21 2.00 2.00 41.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   22 1.90 1.90 42.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   23 1.87 1.87 42.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   24 1.85 1.85 42.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   25 2.49 2.49 43.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   26 2.07 2.07 44.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   27 2.41 2.41 45.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   28 1.95 1.95 50.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   29 2.79 2.79 53.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   30 2.22 2.22 55.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   31 1.68 1.68 59.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.