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PDBsum entry 8tr0

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8tr0 calculated with MOLE 2.0 PDB id
8tr0
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.81 2.81 29.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 3.03 3.03 30.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 1.77 1.77 32.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 1.67 1.67 41.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
5 2.16 2.16 43.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 2.49 2.49 66.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
7 2.11 2.11 71.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 1.40 2.34 26.3 -3.15 -0.71 27.9 82 5 2 4 0 0 0 0  
9 2.63 2.62 41.0 -1.01 -0.34 14.8 84 3 1 4 4 0 1 0  
10 1.68 2.95 75.9 -2.50 -0.63 23.0 87 7 4 4 1 0 0 0  
11 1.89 1.93 33.7 -2.44 -0.68 26.6 91 3 7 5 1 1 0 0  Z99 1001 B
12 2.06 2.06 36.8 -3.34 -0.87 33.4 91 3 5 5 0 0 0 0  
13 1.46 1.60 54.1 -1.80 -0.58 21.9 87 3 8 6 2 3 0 0  Z99 1001 B
14 1.51 1.68 86.2 -2.04 -0.58 25.5 88 7 8 5 2 2 0 0  Z99 1001 B
15 1.70 1.73 31.9 -2.15 -0.54 22.7 90 2 4 4 1 2 0 0  Z99 1001 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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