PDBsum entry 8tkc

Tunnel analysis for: 8tkc calculated with

MOLE 2.0

PDB id

8tkc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.14

1.33

46.5

-0.67

-0.22

12.7

71

6

0

1

5

3

2

2

2

1.16

1.34

49.2

-0.07

-0.17

6.7

67

2

0

3

5

4

2

2

3

1.15

1.35

54.4

-0.60

0.00

16.3

67

5

0

3

5

3

2

2

4

1.13

1.33

57.3

-0.35

-0.04

12.0

71

4

1

3

6

3

2

2

5

1.13

1.32

62.7

-0.43

-0.21

10.8

69

4

0

3

5

4

2

2

6

1.10

2.11

26.0

-0.43

0.34

7.0

71

1

1

3

2

5

0

0

7

1.08

3.37

22.7

1.35

0.22

2.8

91

1

0

2

6

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.