PDBsum entry 8szi

Pore analysis for: 8szi calculated with

MOLE 2.0

PDB id

8szi

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.80

1.83

57.6

-0.42

-0.10

10.8

82

5

1

6

4

3

1

0

2

1.37

1.95

83.2

-0.20

-0.16

12.1

82

6

3

5

8

2

1

0

3

1.41

2.10

83.9

-0.17

-0.26

11.1

83

3

6

6

9

2

0

0

4

1.60

1.79

86.4

-1.76

-0.37

18.9

82

3

3

6

3

2

1

1

5

1.19

1.32

154.7

-2.04

-0.61

30.5

81

11

22

7

6

2

0

1

CA 1004 A

6

1.76

1.81

163.8

-1.83

-0.51

26.2

80

11

19

8

8

5

1

0

CA 1406 B NAG 1 H NAG 2 H

7

1.38

1.38

27.5

-0.72

-0.30

10.0

80

1

1

1

2

2

1

0

8

1.29

1.51

53.6

-1.23

-0.41

22.4

79

7

3

1

4

0

0

0

9

1.30

1.51

62.1

-1.31

-0.28

22.8

79

6

2

2

4

1

1

0

10

1.18

1.76

75.7

-1.36

-0.40

17.0

78

10

3

4

3

4

2

2

11

1.76

1.79

76.8

-2.14

-0.61

26.0

83

6

4

3

3

1

1

0

12

1.76

1.79

131.1

-2.39

-0.06

31.2

77

11

1

2

4

5

2

0

13

1.75

1.79

146.9

-1.22

0.16

23.4

72

11

1

2

5

9

2

1

PCW 1001 A CLR 1401 B

14

1.24

1.47

149.2

-1.93

-0.21

29.1

77

16

3

4

5

4

2

0

PCW 1001 A CLR 1401 B

15

1.88

2.94

165.4

-2.40

-0.41

30.4

80

16

5

5

4

4

2

0

PCW 1001 A CLR 1401 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.