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PDBsum entry 8srb

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Pore analysis for: 8srb calculated with MOLE 2.0 PDB id
8srb
Pores calculated on whole structure Pores calculated excluding ligands

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18 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.68 1.79 35.8 -2.99 -0.53 35.9 83 7 3 2 2 0 0 0  
2 1.08 1.09 43.3 -1.71 -0.46 24.8 81 11 6 1 4 1 0 0  
3 1.30 1.50 55.0 -1.63 -0.61 18.0 85 7 7 4 1 1 0 0  
4 1.49 4.29 123.9 -0.68 -0.27 13.8 82 7 17 8 16 5 0 0  CLR 1703 C CLR 1704 C CLR 6004 D
5 1.41 1.99 129.8 -2.08 -0.54 26.6 83 21 14 9 10 2 1 0  
6 2.52 3.33 138.5 -2.09 -0.46 20.7 79 14 9 14 10 8 8 0  
7 1.49 2.76 145.9 -0.89 -0.35 15.9 82 13 20 9 17 5 0 0  CLR 1702 A CLR 6001 D CLR 6002 D
8 1.47 2.92 145.3 -0.81 -0.32 15.6 83 13 19 9 16 5 0 0  CLR 1703 B CLR 1704 B CLR 1702 C
9 1.20 1.68 148.6 -2.15 -0.56 25.8 84 23 15 10 9 2 0 0  
10 1.50 1.65 153.8 -2.00 -0.45 16.9 79 13 9 16 9 11 6 1  
11 1.32 1.67 155.2 -2.02 -0.56 25.8 84 23 20 10 12 2 0 0  
12 1.44 1.96 160.5 -2.05 -0.50 26.5 84 21 18 12 15 2 0 0  
13 1.46 1.45 215.7 -2.13 -0.50 22.1 80 25 19 17 16 8 9 0  
14 1.18 1.78 219.5 -2.05 -0.54 24.3 84 34 19 14 15 2 0 0  
15 1.31 1.57 213.6 -1.74 -0.38 20.4 82 24 19 20 24 10 11 0  
16 1.39 3.30 234.6 -0.94 -0.28 14.3 82 18 14 15 19 11 0 0  CLR 1703 A
17 1.23 1.46 240.1 -0.97 -0.30 14.5 82 15 15 16 19 11 0 0  CLR 1703 B
18 1.23 1.47 240.3 -1.07 -0.33 15.0 82 15 15 16 19 11 0 0  CLR 1703 C
19 1.20 1.63 230.8 -2.00 -0.43 18.2 81 22 14 20 17 11 7 1  
20 1.21 1.45 237.8 -1.70 -0.36 19.0 83 26 14 22 28 10 11 0  
21 2.02 2.20 242.2 -1.68 -0.35 20.3 81 27 18 23 28 10 11 0  
22 1.34 2.12 242.4 -2.06 -0.48 22.5 81 25 23 20 21 8 9 0  
23 1.32 2.24 253.9 -1.65 -0.37 20.0 82 29 22 25 29 10 11 0  
24 1.20 1.64 258.1 -1.79 -0.39 20.7 82 28 18 24 28 11 11 0  
25 1.46 3.14 332.7 -1.38 -0.32 16.7 79 26 22 24 26 16 9 0  CLR 1703 B
26 2.08 2.14 341.0 -1.78 -0.36 19.1 80 31 25 35 38 15 20 0  
27 1.32 3.08 364.1 -1.15 -0.27 15.3 81 29 23 31 39 20 11 0  CLR 1703 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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