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PDBsum entry 8sgo

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8sgo calculated with MOLE 2.0 PDB id
8sgo
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 2.56 26.3 -2.63 -0.67 30.2 90 4 3 3 1 1 0 0  
2 1.46 1.77 30.0 -2.26 -0.34 23.6 85 6 1 2 3 0 1 0  
3 2.56 2.71 32.4 -1.14 -0.30 20.2 88 4 3 2 5 1 0 0  
4 1.36 2.56 33.9 -2.65 -0.68 30.7 88 6 4 3 1 1 0 0  
5 1.60 1.67 40.2 1.25 0.08 1.0 89 0 0 1 13 1 3 0  PTY 401 B A8W 401 E
6 1.85 2.31 48.1 -1.49 -0.19 18.2 85 6 2 5 4 1 1 0  
7 1.58 2.00 52.0 -1.81 -0.26 23.6 90 9 2 4 4 0 1 0  PTY 401 B
8 2.20 2.22 56.9 -1.33 -0.35 21.0 86 5 6 3 5 0 2 0  
9 1.66 3.04 57.8 -0.15 -0.06 11.9 91 5 2 5 14 0 3 0  A8W 401 E
10 1.46 1.76 63.7 -0.49 -0.06 11.5 89 5 2 6 8 1 2 0  
11 1.58 2.00 64.9 -0.99 -0.15 16.0 90 5 3 5 6 1 2 0  PTY 401 B
12 1.47 1.78 75.4 -0.56 -0.08 12.2 90 5 3 5 11 1 2 0  PTY 401 B
13 1.45 1.76 80.2 -0.16 -0.08 10.7 92 5 2 6 17 0 4 0  A8W 401 E
14 1.24 1.26 101.1 -1.19 -0.41 18.6 86 10 8 6 5 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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