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PDBsum entry 8sff

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 8sff calculated with MOLE 2.0 PDB id
8sff
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.47 126.2 -1.86 -0.25 27.3 76 17 10 4 4 5 0 0  
2 1.42 2.16 131.9 -2.76 -0.45 40.8 79 19 15 0 6 0 0 0  
3 1.76 3.78 139.3 -1.71 -0.24 28.6 78 16 13 5 8 4 0 0  
4 1.37 2.17 141.1 -2.40 -0.42 32.3 79 21 12 5 5 2 2 0  
5 1.38 1.54 164.9 -1.97 -0.47 28.9 78 20 16 5 8 4 2 1  ADP 601 Q MG 602 Q AF3 603 Q
6 1.52 1.52 176.6 -1.79 -0.33 27.6 77 19 15 6 9 3 1 0  
7 1.37 2.29 175.3 -1.86 -0.50 25.0 81 21 14 6 11 0 4 0  
8 1.17 2.45 182.5 -1.74 -0.25 25.8 74 18 13 6 5 7 0 0  
9 1.56 1.54 185.4 -1.84 -0.38 25.2 79 22 12 10 7 6 2 1  
10 1.54 2.13 186.5 -1.60 -0.33 24.9 82 18 16 10 13 2 1 0  
11 1.45 2.19 186.2 -1.58 -0.35 27.9 83 19 19 7 15 1 1 0  
12 1.70 2.13 194.4 -2.23 -0.49 28.6 83 24 15 11 11 2 2 0  
13 2.26 4.09 193.6 -1.28 -0.19 21.9 79 15 17 10 13 6 1 1  
14 2.63 3.00 193.2 -1.27 -0.20 24.5 79 16 19 7 15 5 1 1  
15 1.98 2.25 206.0 -1.83 -0.32 25.2 79 20 16 11 11 7 2 1  
16 1.38 3.71 206.4 -1.99 -0.41 29.1 80 23 17 12 11 5 2 1  
17 1.42 2.28 208.2 -2.06 -0.37 29.9 79 25 14 7 8 3 1 1  
18 1.95 2.26 212.4 -2.17 -0.51 27.5 83 24 16 14 7 4 2 0  
19 2.20 2.33 214.2 -1.54 -0.44 19.8 81 16 16 12 11 4 2 1  
20 1.45 2.29 227.5 -1.91 -0.31 28.8 78 24 18 7 10 4 1 1  
21 2.30 5.57 225.3 -2.16 -0.33 31.8 78 20 19 7 7 5 0 1  
22 1.38 1.54 236.3 -1.93 -0.54 26.2 82 23 20 15 10 5 2 1  ADP 601 Q MG 602 Q AF3 603 Q
23 1.42 3.84 229.2 -2.17 -0.42 32.6 80 26 19 8 12 2 1 1  
24 1.53 1.54 243.7 -1.92 -0.44 27.4 79 26 19 12 12 4 3 1  
25 1.23 1.22 246.2 -1.48 -0.17 25.5 80 26 19 10 17 5 1 1  
26 3.00 3.11 246.9 -1.97 -0.37 27.8 80 23 19 12 8 6 1 1  
27 1.17 2.43 247.8 -1.88 -0.37 28.2 78 25 18 9 9 4 1 1  
28 1.51 1.52 266.5 -2.15 -0.46 31.5 79 29 21 9 13 1 2 1  
29 1.38 1.54 270.8 -1.74 -0.39 26.4 79 22 23 12 11 8 1 2  ADP 601 Q MG 602 Q AF3 603 Q
30 1.82 3.27 327.1 -2.17 -0.39 31.6 77 35 27 4 12 7 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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