PDBsum entry 8s98 Go to PDB code:  Tunnel analysis for: 8s98 calculated with MOLE 2.0 PDB id 8s98 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 2.88 20.2 -1.88 -0.46 18.6 80 3 2 3 1 2 0 1   2 1.38 2.89 24.2 -0.46 -0.16 12.9 82 3 1 1 4 1 1 0  ZRU 901 A 3 1.38 2.20 26.2 -1.80 -0.63 16.0 87 2 3 3 1 1 0 0   4 1.38 2.89 27.0 -0.12 0.01 11.7 77 3 1 1 5 2 1 0  ZRU 901 A 5 1.25 1.37 27.9 -0.29 -0.09 12.2 82 3 1 1 5 1 1 0  ZRU 901 B 6 1.26 1.37 31.5 -1.61 -0.57 16.0 81 3 3 3 1 2 0 1   7 1.43 1.49 21.7 1.05 0.03 3.7 74 1 1 0 3 0 0 1   8 1.13 1.66 17.1 -0.43 0.33 9.2 61 1 1 1 3 4 1 0   9 1.24 2.16 15.3 0.28 0.51 7.5 61 1 0 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.