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PDBsum entry 8s8w

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8s8w calculated with MOLE 2.0 PDB id
8s8w
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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0 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 2.13 22.2 -1.71 -0.66 10.9 82 1 3 3 2 2 4 0  SAM 7202 A U 2 C GTA 101 C
2 1.26 1.99 28.0 -1.73 -0.58 11.8 78 2 2 2 2 2 3 0  SAM 7202 A U 2 C A 4 C GTA 101 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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