PDBsum entry 8s3d Go to PDB code:  Pore analysis for: 8s3d calculated with MOLE 2.0 PDB id 8s3d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   21 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.89 93.2 -1.70 -0.25 24.3 82 13 7 2 8 3 3 0  EDO 2301 F EDO 2302 F 2 1.28 1.62 94.7 -1.78 -0.22 25.4 85 15 6 3 7 2 3 0  PG4 511 A EDO 508 C 3 1.42 1.60 101.8 -1.69 -0.09 27.8 83 18 7 3 10 3 3 0  EDO 505 D PEG 508 D 4 1.31 1.66 103.8 -2.14 -0.46 27.5 84 14 10 5 8 3 3 0  EDO 508 B EDO 505 D EDO 2301 F 5 1.44 3.14 104.7 -2.19 -0.46 28.9 83 14 10 4 7 3 2 0  EDO 508 C EDO 2301 F EDO 2302 F 6 1.49 1.90 104.5 -0.71 0.05 16.7 82 7 5 5 10 2 6 0   7 1.74 2.57 105.1 -1.42 -0.24 25.1 78 9 8 4 7 3 1 0  EDO 502 A NAD 501 D PEG 508 D 8 1.35 3.43 107.2 -2.28 -0.33 31.1 86 18 9 4 8 2 2 0  PG4 511 A EDO 508 C EDO 505 D 9 1.45 1.61 106.6 -1.67 -0.17 25.9 83 18 8 3 9 3 3 0  PG4 511 A EDO 508 C PEG 508 D 10 1.38 3.03 106.3 -1.60 -0.19 24.3 85 17 6 4 10 2 3 0  EDO 505 D 11 1.45 1.61 113.5 -1.26 0.09 24.6 83 21 5 3 12 3 4 0  PEG 508 D 12 1.42 1.82 115.6 -1.79 -0.16 27.1 82 17 10 4 10 4 4 0  EDO 508 B PEG 508 D EDO 2301 F 13 1.32 3.23 144.5 -1.54 -0.20 24.1 84 18 8 6 10 2 5 0  EDO 505 D 14 1.37 3.11 150.2 -1.71 -0.21 25.9 83 19 8 7 9 2 5 0  EDO 508 C 15 1.45 1.61 151.7 -1.23 0.04 24.1 82 21 7 5 12 3 6 0  PEG 508 D 16 1.37 1.60 153.2 -1.66 -0.16 26.1 84 19 8 6 11 3 4 0  PG4 511 A EDO 508 C 17 1.34 3.29 156.1 -1.60 -0.24 24.6 82 17 10 5 10 3 4 0  EDO 2301 F EDO 2302 F 18 1.39 4.21 162.2 -1.76 -0.17 27.0 83 18 10 7 12 4 5 0  EDO 508 B EDO 2301 F 19 1.66 2.08 160.1 -1.30 0.05 24.7 84 22 5 6 14 3 5 0   20 1.33 3.53 159.8 -1.69 -0.14 27.2 85 20 8 7 13 3 4 0  EDO 505 D PG4 507 E 21 1.67 1.82 198.3 -1.28 0.03 24.4 83 23 7 8 14 3 7 0   22 2.38 2.77 28.5 -0.24 0.07 12.2 88 2 2 4 7 0 1 0  NAD 2303 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.