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PDBsum entry 8s1u
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Tunnel analysis for: 8s1u calculated with  MOLE 2.0
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PDB id
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8s1u
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.80 |
20.7 |
-1.48 |
-0.66 |
9.1 |
93 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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U 6 B A 113 B A 114 B
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2 |
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1.19 |
1.75 |
21.3 |
-0.61 |
-0.16 |
2.6 |
79 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 3 B G 4 B U 6 B C 24 B A 25 B A 113 B A 114 B
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3 |
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1.22 |
1.68 |
26.7 |
-0.37 |
-0.08 |
2.4 |
79 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 4 B U 6 B C 24 B A 25 B A 113 B A 114 B
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4 |
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1.36 |
1.36 |
18.6 |
-2.08 |
-0.78 |
28.9 |
88 |
1 |
4 |
1 |
1 |
0 |
0 |
0 |
A 1316 A G 1317 A G 1318 A C 1331 A U 1332 A C
1333 A
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5 |
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1.37 |
1.37 |
21.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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C 1495 A G 1496 A G 1497 A A 1575 A G 1576 A C
1577 A G 1591 A
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6 |
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1.18 |
1.79 |
19.2 |
0.54 |
-0.04 |
3.8 |
84 |
0 |
2 |
1 |
5 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program