PDBsum entry 8s19

Tunnel analysis for: 8s19 calculated with

MOLE 2.0

PDB id

8s19

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

3.03

22.8

0.45

-0.08

12.2

75

1

2

1

6

0

0

1

STU 1001 A

2

1.34

3.03

27.5

-0.70

-0.23

19.8

78

3

3

1

4

1

0

1

STU 1001 A

3

1.23

1.23

28.1

-0.97

-0.25

15.2

77

3

2

1

5

1

1

0

4

1.22

1.22

31.1

-0.55

-0.07

15.1

78

3

2

1

6

2

1

0

5

1.23

1.23

38.4

-0.86

-0.23

16.8

79

2

4

3

5

2

1

0

STU 1001 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.