 |
PDBsum entry 8rql
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 8rql calculated with MOLE 2.0
|
PDB id
|
|
|
|
8rql
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
1 tunnel,
coloured by tunnel radius |
 |
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.26 |
29.6 |
0.01 |
0.04 |
5.8 |
79 |
 |
1 |
0 |
2 |
6 |
4 |
1 |
0 |
 |
FLF 402 R
|
 |
 |
2 |
 |
1.52 |
1.85 |
38.2 |
-0.09 |
-0.01 |
7.5 |
78 |
3 |
1 |
2 |
6 |
6 |
1 |
0 |
FLF 402 R
|
 |
3 |
 |
1.50 |
1.62 |
38.4 |
0.61 |
0.29 |
6.6 |
74 |
3 |
0 |
1 |
8 |
7 |
1 |
0 |
FLF 402 R
|
 |
4 |
 |
1.41 |
1.59 |
38.6 |
1.02 |
0.63 |
1.6 |
84 |
0 |
1 |
5 |
7 |
7 |
1 |
0 |
FLF 401 R
|
 |
5 |
 |
1.51 |
1.63 |
44.4 |
0.28 |
0.16 |
8.5 |
79 |
3 |
2 |
2 |
9 |
6 |
1 |
0 |
FLF 402 R
|
 |
6 |
 |
1.42 |
1.59 |
61.9 |
0.90 |
0.37 |
2.1 |
81 |
1 |
1 |
5 |
8 |
6 |
0 |
0 |
FLF 401 R
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |