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PDBsum entry 8qwf
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Pore analysis for: 8qwf calculated with  MOLE 2.0
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PDB id
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8qwf
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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30 pores,
coloured by radius |
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30 pores,
coloured by radius
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30 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.56 |
1.66 |
35.6 |
-1.93 |
-0.64 |
16.4 |
77 |
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5 |
3 |
3 |
1 |
2 |
0 |
0 |
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2 |
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1.37 |
1.37 |
36.8 |
-2.00 |
-0.71 |
18.0 |
84 |
4 |
3 |
2 |
0 |
0 |
0 |
0 |
DA -6 N DT -5 N DA -4 N DG 7 T DC 8 T
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3 |
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1.28 |
1.30 |
47.5 |
0.31 |
0.14 |
7.2 |
68 |
4 |
4 |
2 |
10 |
10 |
2 |
0 |
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4 |
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1.30 |
1.55 |
53.0 |
0.35 |
0.20 |
10.2 |
69 |
5 |
2 |
2 |
10 |
9 |
2 |
0 |
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5 |
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1.23 |
2.00 |
57.3 |
-1.48 |
0.01 |
24.2 |
72 |
8 |
2 |
2 |
4 |
8 |
1 |
0 |
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6 |
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1.30 |
1.54 |
66.3 |
-1.82 |
-0.22 |
24.4 |
71 |
8 |
5 |
2 |
4 |
9 |
2 |
0 |
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7 |
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1.30 |
1.30 |
72.0 |
-2.19 |
-0.85 |
26.1 |
85 |
6 |
5 |
4 |
0 |
0 |
0 |
0 |
DA -6 N DT -5 N DA -4 N DT -3 N DT -2 N DT -
1 N DA 0 N DT 1 N DC 3 N DT 4 N DA -4 T DG -
3 T DG -2 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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8 |
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1.32 |
1.31 |
108.4 |
-2.05 |
-0.58 |
23.6 |
81 |
8 |
6 |
1 |
3 |
3 |
0 |
0 |
C 3 C U 4 C A 5 C U 11 C U 12 C A 13 C DA -
6 N DT -5 N DA -4 N DT -3 N DT -2 N DC -10 T DG -
9 T DC -8 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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9 |
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2.34 |
2.57 |
109.1 |
-1.64 |
-0.63 |
18.4 |
78 |
9 |
5 |
2 |
2 |
3 |
0 |
0 |
U 1 C C 2 C C 3 C U 4 C U 11 C U 12 C A 13 C DT 4
N DC -10 T DG -9 T DC -8 T DC -7 T DT -6 T DT -
5 T DA -4 T DG -3 T DG -2 T DA -1 T
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10 |
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1.31 |
1.56 |
118.3 |
-1.52 |
-0.50 |
17.7 |
78 |
11 |
8 |
4 |
3 |
3 |
3 |
0 |
A -18 C U -12 C A -11 C C -10 C U -9 C G -8 C U -
7 C U 1 C C 2 C C 3 C U 4 C DT 4 N DC -8 T DC -
7 T DT -5 T DA -4 T DG -3 T DG -2 T DA -1 T
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11 |
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1.33 |
1.32 |
120.7 |
-1.96 |
-0.61 |
22.9 |
83 |
7 |
6 |
4 |
3 |
2 |
1 |
0 |
C 3 C U 4 C A 5 C DA -6 N DT -5 N DA -4 N DT -
3 N DT -2 N DG -15 T DG -14 T DT -13 T DA -
12 T DA -11 T DC -10 T DG -9 T DC -
8 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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12 |
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3.11 |
3.18 |
121.4 |
-1.53 |
-0.67 |
17.5 |
81 |
8 |
5 |
5 |
2 |
2 |
1 |
0 |
U 1 C C 2 C C 3 C U 4 C DT 4 N DG -15 T DG -
14 T DT -13 T DA -12 T DA -11 T DC -10 T DG -
9 T DC -8 T DC -7 T DT -6 T DT -5 T DA -4 T DG -
3 T DG -2 T DA -1 T
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13 |
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1.34 |
1.35 |
127.0 |
-1.71 |
-0.49 |
20.2 |
80 |
10 |
10 |
3 |
4 |
3 |
3 |
0 |
A -18 C U -12 C A -11 C C -10 C U -9 C G -8 C U -
7 C C 3 C U 4 C A 5 C DA -6 N DT -5 N DA -4 N DT -
3 N DT -2 N DC -10 T DC -
8 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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14 |
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2.21 |
4.48 |
141.8 |
-2.58 |
-0.44 |
29.9 |
82 |
17 |
4 |
7 |
3 |
5 |
0 |
0 |
U 11 C U 12 C A 13 C DG -15 T DG -14 T DT -13 T
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15 |
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2.15 |
4.29 |
163.9 |
-2.17 |
-0.60 |
24.6 |
81 |
17 |
7 |
6 |
1 |
6 |
0 |
0 |
U 1 C C 2 C C 3 C U 4 C U 11 C U 12 C DT 4 N DC -
10 T DG -9 T DC -8 T DC -7 T DT -6 T DT -5 T DA -
4 T DG -3 T DG -2 T DA -1 T
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16 |
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1.30 |
1.52 |
187.6 |
-1.96 |
-0.45 |
24.0 |
83 |
15 |
12 |
6 |
5 |
3 |
3 |
0 |
A -11 C C -10 C U -9 C G -8 C U -7 C
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17 |
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1.30 |
1.54 |
203.5 |
-2.01 |
-0.46 |
25.1 |
84 |
15 |
12 |
10 |
5 |
1 |
3 |
0 |
A -11 C C -10 C U -9 C G -8 C U -7 C
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18 |
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1.54 |
1.65 |
221.5 |
-2.57 |
-0.45 |
30.4 |
84 |
21 |
12 |
13 |
3 |
5 |
2 |
0 |
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19 |
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1.83 |
1.90 |
256.3 |
-1.87 |
-0.49 |
25.1 |
81 |
21 |
18 |
9 |
6 |
4 |
3 |
0 |
A -18 C U -12 C C -
10 C U 1 C C 2 C C 3 C U 4 C DT 4 N DC -8 T DC -
7 T DT -5 T DA -4 T DG -3 T DG -2 T DA -1 T
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20 |
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1.47 |
1.65 |
240.5 |
-2.34 |
-0.51 |
30.7 |
83 |
24 |
14 |
6 |
5 |
4 |
2 |
0 |
U 11 C U 12 C A 13 C DG -15 T DG -14 T DT -13 T
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21 |
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1.86 |
3.60 |
258.2 |
-1.42 |
-0.47 |
21.1 |
83 |
10 |
10 |
7 |
6 |
5 |
0 |
0 |
U 1 C C 2 C C 3 C U 4 C A 5 C A 6 C G 7 C G 8 C C
9 C DT 4 N DA -12 T DA -11 T DC -10 T DC -8 T DC -
7 T DT -6 T DT -5 T DA -4 T DG -3 T DG -2 T DA -
1 T
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22 |
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1.77 |
1.58 |
256.4 |
-2.39 |
-0.52 |
31.3 |
85 |
24 |
14 |
10 |
5 |
2 |
2 |
0 |
U 11 C U 12 C A 13 C DG -15 T DG -14 T DT -13 T
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23 |
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1.21 |
1.21 |
282.7 |
-2.00 |
-0.50 |
26.1 |
82 |
22 |
20 |
10 |
7 |
4 |
3 |
0 |
A -18 C U -12 C C -10 C C 3 C U 4 C A 5 C DA -
6 N DT -5 N DA -4 N DT -3 N DT -2 N DC -10 T DC -
8 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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24 |
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1.85 |
4.77 |
266.4 |
-1.47 |
-0.25 |
23.3 |
84 |
12 |
9 |
8 |
9 |
3 |
1 |
0 |
A 13 C DG -15 T DT -13 T DA -12 T DA -11 T
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25 |
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0.99 |
1.14 |
274.8 |
-1.81 |
-0.52 |
22.6 |
81 |
24 |
21 |
11 |
9 |
6 |
4 |
0 |
A -18 C U -12 C C -
10 C U 1 C C 2 C C 3 C U 4 C DT 4 N DC -8 T DC -
7 T DT -5 T DA -4 T DG -3 T DG -2 T DA -1 T
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26 |
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1.22 |
1.21 |
271.1 |
-1.76 |
-0.46 |
24.0 |
84 |
11 |
12 |
8 |
7 |
5 |
0 |
0 |
C 3 C U 4 C A 5 C A 6 C G 7 C G 8 C C 9 C DA -
6 N DT -5 N DA -4 N DT -3 N DT -2 N DA -12 T DA -
11 T DC -10 T DT 0 T DA 1 T DA 2 T DA 3 T DT 4 T
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27 |
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1.31 |
1.43 |
293.3 |
-1.51 |
-0.43 |
19.8 |
83 |
15 |
13 |
10 |
9 |
4 |
3 |
0 |
A -18 C U -12 C A -11 C C -10 C U -9 C G -8 C U -
7 C C 3 C U 4 C A 5 C A 6 C G 7 C G 8 C C 9 C DA -
12 T DA -11 T DC -10 T DC -8 T
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28 |
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1.97 |
1.97 |
312.3 |
-1.94 |
-0.50 |
25.4 |
78 |
26 |
22 |
5 |
6 |
7 |
3 |
0 |
A -18 C U -12 C C -
10 C U 1 C C 2 C C 3 C U 4 C DT -
1 N DA 0 N DT 1 N DC 2 N DC 3 N DT 4 N DC -
8 T DC -7 T DT -5 T DA -4 T DG -3 T DG -2 T DA -
1 T DA 5 T DT 6 T DG 7 T
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29 |
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1.94 |
4.31 |
322.6 |
-1.93 |
-0.46 |
23.0 |
82 |
19 |
9 |
14 |
7 |
8 |
1 |
0 |
G 8 C C 9 C G 10 C U 11 C DG -14 T DA -12 T DG -
9 T DC -7 T
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30 |
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1.14 |
0.76 |
443.1 |
-1.85 |
-0.50 |
24.3 |
84 |
26 |
19 |
17 |
10 |
6 |
3 |
0 |
G 8 C C 9 C G 10 C U 11 C DG -14 T DA -12 T DG -
9 T DC -7 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program