spacer
spacer

PDBsum entry 8qcc

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 8qcc calculated with MOLE 2.0 PDB id
8qcc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.39 1.46 19.2 -0.36 -0.46 8.6 74 1 1 1 2 1 2 0  ADP 301 B UKO 302 B MG 303 B
2 1.40 1.49 20.9 0.27 -0.36 6.0 76 0 2 0 4 0 2 0  ADP 301 B MG 303 B
3 1.40 1.49 28.6 0.50 -0.29 4.8 83 1 1 1 4 0 1 0  ADP 301 B MG 303 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer