PDBsum entry 8q1b Go to PDB code:  Pore analysis for: 8q1b calculated with MOLE 2.0 PDB id 8q1b Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.23 3.38 63.0 2.45 0.60 1.1 88 0 1 1 21 0 0 1  CDL 502 A PEF 504 A PCF 505 A U10 403 C PEF 402 D U10 403 N 2 1.34 3.22 82.0 -0.18 -0.02 12.7 79 5 5 5 17 7 2 0   3 1.20 3.47 83.6 -0.21 0.11 17.3 82 6 8 4 10 4 1 0   4 1.14 1.41 88.2 -0.95 -0.08 15.0 77 7 6 6 9 6 3 0  PEF 405 N 5 1.42 3.26 91.0 -0.21 -0.01 17.1 82 7 8 5 15 3 2 0   6 1.92 2.08 92.7 -0.62 -0.17 12.5 78 5 6 7 11 8 4 0   7 1.38 2.49 92.9 -0.46 0.16 12.7 80 6 2 5 17 6 1 1  CDL 502 A PEF 504 A PCF 505 A PEF 402 D 8 1.98 2.08 102.3 -0.74 -0.17 17.5 81 7 9 8 13 3 4 0   9 1.32 3.32 102.5 0.25 0.08 15.1 79 5 10 2 18 4 4 0   10 1.91 2.02 108.1 -1.26 -0.37 17.3 78 6 10 7 8 5 5 0   11 1.71 1.96 113.1 -0.47 -0.12 16.1 79 5 11 5 13 4 6 0   12 2.34 2.52 115.3 -1.72 -0.39 22.4 80 10 9 9 7 5 2 0  PEF 101 J 13 1.94 2.07 124.1 -1.41 -0.37 22.1 80 8 12 8 9 1 6 0   14 3.40 4.33 123.2 -1.42 -0.33 23.9 80 5 12 7 4 3 2 0  PEF 101 J 15 2.73 3.33 125.2 0.73 0.40 8.6 78 3 3 4 24 6 3 1  CDL 502 L PCF 503 L U10 403 N PEF 404 N PEF 405 N PCF 101 T 16 1.32 2.93 127.4 -0.58 -0.16 19.3 81 7 12 4 15 3 3 0   17 1.88 1.99 130.2 -0.96 -0.31 18.9 79 5 15 4 8 2 6 0   18 1.26 1.25 140.4 -0.20 0.12 12.4 81 11 5 6 16 8 3 0  HEA 602 a CU 603 a PEF 302 b 19 2.32 2.32 148.0 -0.67 -0.14 14.0 84 12 7 14 18 3 1 1  CDL 502 A PCF 503 A PEF 504 A PCF 505 A PEF 402 D 20 1.76 1.99 165.1 -0.41 -0.15 14.1 80 7 9 6 18 5 6 0   21 1.49 3.10 183.9 -1.11 -0.24 23.6 80 14 14 5 17 5 2 0  PEF 101 J 22 1.31 2.89 185.9 -0.21 0.32 10.5 78 9 3 9 19 14 3 1   23 1.75 2.02 192.0 -1.27 -0.31 22.2 79 14 14 8 13 7 4 0  PEF 101 J 24 1.40 1.46 207.2 -0.21 0.11 9.5 75 6 4 9 15 14 6 0   25 2.02 2.20 207.4 -1.75 -0.45 26.2 79 15 18 7 10 4 5 0  PEF 101 J 26 1.44 3.34 208.8 -0.79 0.09 15.5 78 14 9 12 20 19 2 1   27 1.35 3.65 223.0 -0.77 0.04 18.7 77 17 13 8 19 14 7 0  HEC 401 D CDL 101 H CDL 102 H 28 1.42 2.02 264.0 -0.52 0.08 12.5 76 12 6 12 16 12 3 0  PEF 201 k 29 1.85 1.96 260.8 -1.15 -0.13 19.4 77 18 18 12 15 13 8 0  HEC 401 D CDL 101 H CDL 102 H 30 1.37 3.18 276.3 -0.90 -0.05 17.2 80 19 15 10 22 14 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.