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PDBsum entry 8pm2

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8pm2 calculated with MOLE 2.0 PDB id
8pm2
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.15 3.62 29.6 -1.72 -0.42 13.3 86 3 0 6 2 1 2 0  
2 1.65 4.15 51.6 -1.29 -0.50 16.4 85 6 3 5 5 2 1 1  
3 2.83 2.95 52.7 -1.34 -0.35 14.1 80 6 3 4 1 4 0 0  
4 3.14 3.62 59.4 -1.15 -0.34 10.4 84 6 0 7 3 3 2 0  
5 1.69 4.02 106.1 -1.08 -0.41 15.2 84 10 4 7 6 5 1 1  
6 1.27 3.16 125.8 -1.72 -0.55 18.1 87 8 6 10 6 3 1 1  
7 1.39 3.43 153.5 -1.43 -0.47 16.3 88 10 5 16 9 6 0 1  
8 1.27 1.50 282.4 -0.93 -0.22 16.9 84 14 9 9 18 6 0 1  Y01 401 R

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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