spacer
spacer

PDBsum entry 8pjk

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 8pjk calculated with MOLE 2.0 PDB id
8pjk
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.80 3.94 25.9 -1.98 -0.52 23.5 84 3 3 2 1 2 0 0  
2 3.56 5.61 27.8 -2.25 -0.61 28.9 85 4 4 1 2 1 0 0  
3 1.66 1.75 43.3 -2.11 -0.75 23.6 89 3 5 4 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer