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PDBsum entry 8osj
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 8osj calculated with MOLE 2.0 PDB id
8osj
Pores calculated on whole structure Pores calculated excluding ligands
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15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 1.34 25.1 -1.36 -0.70 14.4 80 2 0 0 0 0 1 0  DT 68 I DA 69 I DC 70 I DG 71 I DC 72 I DG 73 I
DG 78 J DT 79 J DA 80 J DC 81 J DG 82 J DT 83 J
2 1.08 1.08 26.3 -1.03 -0.74 10.9 83 1 0 0 0 0 0 0  DC 79 I DC 80 I DC 82 I DG 83 I DC 84 I DG 67 J
DG 68 J DG 69 J DG 70 J DA 71 J DC 72 J DA 73 J
3 2.31 2.31 42.0 -0.47 -0.81 4.5 77 0 1 0 0 0 0 0  DA 39 I DT 115 I DA 120 I DG 121 I DG 122 I DC
123 I DA 124 I DT 28 J DG 29 J DG 30 J DA 31 J DG
32 J DC 104 J DT 105 J
4 3.69 3.83 91.0 -1.32 -0.73 14.4 91 4 2 5 1 1 0 0  DA 20 I DT 38 I DA 39 I DA 103 I DT 104 I DT 105
I DG 114 I DT 115 I DG 29 J DG 39 J DC 114 J DG
124 J
5 2.55 2.79 97.9 -0.95 -0.53 10.6 84 4 2 5 2 1 1 0  DA 39 I DT 115 I DA 124 I DC 125 I DA 131 I DG
132 I DA 133 I DC 20 J DA 21 J DC 22 J DG 29 J DC
104 J DT 105 J
6 2.62 2.64 105.5 -0.93 -0.66 9.2 90 7 0 6 2 2 0 0  DA 20 I DG 102 I DA 103 I DT 104 I DC 111 I DT
112 I DA 33 J DG 41 J DT 42 J DA 43 J DG 124 J
7 1.23 1.23 146.7 -1.57 -0.70 16.5 78 5 2 3 2 0 0 0  DA 39 I DT 48 I DA 49 I DG 50 I DC 51 I DA 52 I
DC 53 I DC 54 I DC 62 I DG 63 I DC 72 I DT 115 I
DA 124 I DC 125 I DT 28 J DG 29 J DA 80 J DC 81 J
DA 90 J DA 91 J DT 99 J DA 100 J DG 101 J DA 102
J DG 103 J DC 104 J DT 105 J
8 2.08 2.35 160.1 -1.96 -0.70 21.0 82 9 3 3 1 1 1 0  DC 84 I DG 85 I DT 86 I DA 90 I DA 91 I DG 100 I
DG 101 I DC 111 I DT 112 I DA 33 J DG 41 J DT 42
J DA 43 J DG 52 J DG 53 J DA 60 J DA 61 J DA 62 J
DC 63 J
9 1.40 1.40 173.9 -1.97 -0.55 22.3 79 20 6 4 4 4 2 0  DA 39 I DA 60 I DA 61 I DC 62 I DA 69 I DC 70 I
DT 115 I DG 29 J DG 82 J DT 83 J DC 93 J DC 104 J
DT 105 J
10 1.76 1.96 176.2 -1.77 -0.56 20.5 81 17 5 6 4 4 1 0  DA 20 I DA 60 I DA 61 I DC 62 I DG 63 I DC 64 I
DC 72 I DG 73 I DA 80 J DC 81 J DG 82 J DT 83 J
DC 93 J DG 124 J
11 2.09 2.52 186.5 -2.11 -0.74 23.5 80 13 5 4 0 0 1 0  DT 38 I DA 39 I DC 84 I DG 85 I DT 86 I DA 90 I D
A 91 I DG 100 I DG 101 I DG 102 I DA 103 I DT 104
I DT 105 I DG 114 I DT 115 I DG 29 J DG 39 J DA
40 J DT 42 J DA 43 J DG 52 J DG 53 J DA 60 J DA
61 J DA 62 J DC 63 J DC 114 J
12 1.21 1.21 191.3 -1.44 -0.72 14.4 80 8 4 3 2 0 2 0  DT 48 I DA 49 I DG 50 I DC 51 I DA 52 I DC 53 I
DC 54 I DC 62 I DG 63 I DC 64 I DA 69 I DC 70 I D
A 120 I DG 121 I DG 122 I DC 123 I DA 124 I DC
125 I DT 28 J DG 29 J DG 30 J DA 31 J DG 32 J DG
82 J DT 83 J DA 90 J DA 91 J DT 99 J DA 100 J DG
101 J DA 102 J DG 103 J DC 104 J DT 105 J
13 1.99 2.69 194.7 -1.65 -0.65 17.4 84 13 3 7 1 1 1 0  DA 20 I DC 84 I DG 85 I DT 86 I DA 90 I DA 91 I
DG 100 I DG 101 I DG 102 I DA 103 I DT 104 I DT
42 J DA 43 J DG 52 J DG 53 J DA 60 J DA 61 J DA
62 J DC 63 J DG 124 J
14 1.32 1.32 213.1 -1.95 -0.65 23.1 83 19 8 7 5 2 2 0  DA 60 I DA 61 I DC 62 I DA 69 I DC 70 I DC 111 I
DT 112 I DG 41 J DT 42 J DA 43 J DG 82 J DT 83 J
DC 93 J
15 1.25 2.14 278.3 -2.26 -0.65 25.9 80 22 11 8 3 2 2 0  DA 60 I DA 61 I DC 62 I DG 63 I DC 64 I DC 72 I
DG 73 I DC 84 I DG 85 I DT 86 I DA 90 I DA 91 I
DG 100 I DG 101 I DG 52 J DG 53 J DA 60 J DA 61 J
DA 62 J DC 63 J DA 80 J DC 81 J DG 82 J DT 83 J
DC 93 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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