PDBsum entry 8kgk

Pore analysis for: 8kgk calculated with

MOLE 2.0

PDB id

8kgk

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.47

2.47

29.6

-1.75

-0.49

17.3

82

3

3

4

3

1

1

0

2

1.18

1.70

35.0

-0.73

-0.39

9.5

83

3

2

4

5

1

0

0

3

1.20

1.52

42.1

-0.58

-0.06

16.5

80

5

2

0

2

2

1

1

4

1.24

1.57

55.9

-0.89

-0.44

12.8

84

5

3

6

5

3

3

1

5

1.34

3.41

59.6

-3.02

-0.60

30.9

83

6

3

2

1

0

1

0

6

1.19

1.52

61.7

-0.84

-0.24

11.8

83

4

1

3

2

3

1

0

7

1.20

1.54

62.2

-1.51

-0.11

19.9

79

7

1

3

1

4

0

1

8

1.20

1.54

67.7

-1.76

-0.49

16.4

83

7

4

9

4

4

0

1

9

1.32

3.40

70.8

-1.27

-0.38

17.7

82

9

4

6

4

4

2

2

10

1.60

1.59

88.8

-1.70

-0.38

19.6

82

10

4

8

5

4

0

2

11

1.21

1.48

117.5

0.49

0.16

6.3

78

4

1

6

16

3

1

0

12

1.18

1.27

137.3

0.13

0.21

10.7

83

6

3

7

17

5

1

0

13

1.60

1.80

149.1

-1.47

-0.44

19.3

88

10

7

9

8

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.