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PDBsum entry 8kd7
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Tunnel analysis for: 8kd7 calculated with  MOLE 2.0
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PDB id
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8kd7
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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10 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.49 |
59.0 |
-1.34 |
-0.51 |
19.3 |
86 |
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6 |
8 |
4 |
4 |
2 |
1 |
0 |
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2 |
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1.23 |
1.30 |
63.0 |
-1.75 |
-0.47 |
20.2 |
80 |
9 |
8 |
3 |
2 |
4 |
2 |
0 |
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3 |
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1.23 |
1.28 |
66.5 |
-1.14 |
-0.37 |
18.0 |
87 |
7 |
7 |
6 |
5 |
3 |
1 |
0 |
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4 |
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1.26 |
2.71 |
73.4 |
-1.25 |
-0.24 |
18.7 |
78 |
9 |
7 |
3 |
7 |
5 |
3 |
0 |
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5 |
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1.24 |
1.32 |
96.8 |
-1.65 |
-0.44 |
21.8 |
82 |
13 |
9 |
5 |
4 |
3 |
2 |
0 |
DA -41 X DC -40 X
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6 |
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1.43 |
1.43 |
16.1 |
-0.91 |
-0.37 |
9.5 |
70 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
DT 69 X DC 70 X DG -68 Y DA -67 Y DA -
66 Y DC 10 Y DG 11 Y
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7 |
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1.30 |
1.30 |
17.2 |
-0.90 |
-0.33 |
8.8 |
70 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
DT 69 X DC 70 X DG -68 Y DA -67 Y DA -
66 Y DC 10 Y DG 11 Y
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program