PDBsum entry 8k5u Go to PDB code:  Tunnel analysis for: 8k5u calculated with MOLE 2.0 PDB id 8k5u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 1.90 20.8 -0.98 -0.07 15.7 75 3 1 2 3 2 0 0   2 1.26 2.04 21.1 0.33 0.39 9.0 78 2 0 2 5 2 0 0   3 1.45 1.92 31.0 -0.71 -0.27 10.4 81 2 1 4 4 1 1 0   4 1.26 1.99 31.3 0.32 0.08 5.2 85 1 0 4 6 1 0 0   5 1.45 1.84 41.7 -1.45 -0.17 20.1 80 7 2 2 5 2 0 0   6 1.26 2.00 42.1 -0.83 0.07 17.3 82 6 1 2 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.