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PDBsum entry 8k0c

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 8k0c calculated with MOLE 2.0 PDB id
8k0c
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 2.15 43.1 -0.70 -0.26 8.8 84 2 3 5 2 5 0 1  
2 1.15 1.58 53.6 0.67 0.28 14.5 85 3 4 4 10 0 2 0  
3 1.45 1.44 60.8 -0.54 -0.29 14.1 87 5 4 6 5 1 2 0  
4 1.46 1.44 61.6 -0.65 -0.31 15.0 87 6 4 6 5 1 2 0  
5 1.22 2.16 71.5 -1.02 -0.23 10.2 82 5 4 6 3 7 0 1  
6 1.50 2.04 79.4 -1.76 -0.57 21.8 81 5 5 2 6 0 3 0  
7 1.45 1.45 127.9 -1.35 -0.38 14.5 87 4 7 11 5 3 3 0  
8 1.44 1.44 131.7 -1.44 -0.40 14.6 88 5 7 12 5 3 3 0  
9 1.85 2.02 132.3 -1.96 -0.56 19.3 88 6 9 11 3 2 3 0  
10 1.84 2.00 136.9 -1.93 -0.56 18.9 89 6 9 12 3 2 3 0  
11 1.44 1.43 189.0 -1.30 -0.52 15.9 86 10 7 13 6 2 4 0  
12 1.61 3.29 208.2 -2.03 -0.69 16.3 86 7 9 16 1 3 5 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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