PDBsum entry 8jsr Go to PDB code:  Tunnel analysis for: 8jsr calculated with MOLE 2.0 PDB id 8jsr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 2.77 35.1 -0.91 0.36 19.1 70 4 2 2 3 8 0 0  UYI 601 R 2 1.34 1.46 45.5 -0.75 0.19 17.2 72 3 2 4 5 9 1 0  UYI 601 R 3 1.27 1.30 32.1 -1.97 -0.71 21.6 82 4 2 2 2 2 0 1   4 1.27 1.30 38.3 -1.95 -0.71 19.9 76 3 3 5 2 2 0 1   5 1.27 1.30 45.7 -1.58 -0.54 21.3 79 5 3 4 3 2 0 1   6 1.27 1.30 48.1 -1.92 -0.61 21.9 81 5 4 4 4 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.