PDBsum entry 8jru

Pore analysis for: 8jru calculated with

MOLE 2.0

PDB id

8jru

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.04

1.20

26.2

0.54

0.15

8.2

66

0

1

0

4

2

0

1

2

1.52

1.71

31.1

-1.05

-0.35

9.1

74

1

2

1

2

0

3

0

3

1.42

1.42

72.4

-1.65

-0.29

21.4

81

8

5

3

2

3

2

0

TPO 1360 R

4

1.57

2.88

73.6

-2.31

-0.47

32.0

83

12

7

3

2

2

1

1

SEP 1357 R TPO 1360 R

5

1.41

2.72

75.2

-2.40

-0.38

29.5

79

12

6

0

1

2

1

1

SEP 1357 R

6

1.24

1.31

80.3

-0.97

-0.27

15.5

85

6

6

3

7

3

2

0

7

1.30

1.31

97.1

-1.69

-0.45

26.4

86

12

9

3

7

2

1

1

SEP 1357 R

8

1.22

2.93

106.8

-1.34

-0.39

21.6

87

11

8

8

6

3

2

0

9

1.19

2.26

112.0

-1.52

-0.38

19.6

79

10

7

5

8

5

0

2

SEP 1357 R

10

1.22

2.85

159.0

-0.72

-0.30

14.4

84

11

7

11

14

5

1

2

11

1.18

2.12

161.0

-1.02

-0.36

15.7

84

11

8

11

13

5

1

1

12

1.22

1.30

62.7

0.51

0.19

7.4

71

2

1

2

10

4

0

0

13

1.72

4.07

196.3

0.51

0.50

6.5

68

2

1

4

15

11

1

0

14

1.24

1.30

216.0

0.71

0.46

6.5

68

4

1

4

16

9

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.