PDBsum entry 8jpn Go to PDB code:  Tunnel analysis for: 8jpn calculated with MOLE 2.0 PDB id 8jpn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 2.99 50.1 -0.69 0.02 13.8 79 3 3 7 4 6 0 0  U9S 501 R 2 1.22 3.00 53.1 -0.23 0.18 10.2 75 3 4 6 5 8 0 0  U9S 501 R 3 1.24 1.24 15.8 -0.62 -0.56 10.9 89 1 1 2 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.