PDBsum entry 8jd3 Go to PDB code:  Pore analysis for: 8jd3 calculated with MOLE 2.0 PDB id 8jd3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.71 28.4 -1.57 -0.26 16.0 72 4 1 0 1 1 1 2   2 1.44 2.06 52.0 -2.04 -0.81 24.6 86 4 7 5 1 1 1 0   3 1.87 2.99 72.5 -2.52 -0.69 33.2 81 8 10 3 2 2 1 0   4 1.74 1.74 75.3 -1.38 -0.44 24.5 83 4 10 4 4 4 1 0   5 1.16 1.32 83.7 -1.71 -0.55 21.9 81 6 11 3 3 4 2 0  GLU 901 3 6 1.12 1.41 93.3 -0.60 -0.19 11.4 75 2 5 5 3 4 1 2   7 1.42 2.55 117.7 -0.05 -0.06 12.5 77 4 5 4 11 7 0 1   8 1.11 0.99 146.7 -0.46 -0.01 16.4 76 10 7 9 22 5 3 0   9 1.43 1.99 144.5 -0.59 -0.24 12.0 84 10 5 4 11 3 1 0   10 1.21 1.31 147.6 -0.47 0.01 15.2 77 13 3 6 12 11 4 1  HZR 901 2 CLR 902 3 CLR 903 3 PEF 904 3 11 1.20 1.22 154.6 -0.21 0.11 13.0 79 8 2 7 14 7 2 3   12 1.23 1.28 211.5 -1.41 -0.32 20.7 84 15 6 7 7 3 3 0   13 1.34 3.71 211.6 -0.95 -0.15 17.6 81 17 5 6 13 8 2 1  HZR 901 2 CLR 902 3 CLR 903 3 PEF 904 3 14 1.60 1.71 219.3 -0.55 -0.26 13.5 85 16 6 9 22 5 1 1   15 1.29 1.40 305.0 -1.11 -0.15 17.9 80 19 5 10 17 9 5 3  CLR 903 2 CLR 903 3 PEF 904 3 16 1.25 1.32 315.1 -0.93 -0.33 13.7 83 19 12 13 15 5 4 1   17 1.20 1.50 303.9 -0.61 -0.22 11.7 81 18 9 10 22 7 3 2  CLR 902 3 CLR 903 3 PEF 904 3 18 1.31 1.33 338.5 -0.85 -0.18 16.1 78 21 15 11 22 14 2 3  HZR 901 2 CLR 902 3 CLR 903 3 PEF 904 3 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.