PDBsum entry 8jd2

Pore analysis for: 8jd2 calculated with

MOLE 2.0

PDB id

8jd2

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.42

33.5

-0.23

-0.18

7.3

62

1

2

1

2

1

3

2

2

1.20

1.24

43.0

0.58

0.09

6.6

90

2

0

2

9

1

1

0

3

1.34

1.47

43.8

0.02

0.04

8.8

83

4

0

3

6

3

2

1

4

1.31

1.32

49.3

-2.71

-0.67

30.0

84

5

6

4

0

0

0

0

5

1.22

1.25

64.0

1.88

0.49

4.8

78

1

2

1

15

1

1

3

6

1.62

1.61

95.7

0.54

0.31

9.7

79

3

1

5

14

5

0

2

7

1.70

1.75

100.7

1.03

0.33

7.4

74

5

2

3

16

6

1

4

8

2.06

2.55

118.6

-2.00

-0.62

26.6

87

11

12

8

5

1

0

0

9

2.04

2.55

128.7

-1.63

-0.60

19.8

87

8

10

10

4

1

2

0

10

2.05

2.76

137.8

-1.52

-0.47

22.8

85

11

11

8

7

3

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.