PDBsum entry 8jcv Go to PDB code:  Tunnel analysis for: 8jcv calculated with MOLE 2.0 PDB id 8jcv Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 2.04 59.6 0.74 0.17 2.3 80 1 0 5 10 7 1 0  NAG 2001 3 2 1.28 2.73 35.9 1.56 0.76 1.4 78 0 0 1 10 4 0 0   3 1.27 2.75 37.2 1.24 0.70 1.3 77 0 0 1 10 4 2 0  NAG 2001 2 4 1.27 2.75 38.1 1.38 0.65 4.1 75 1 1 0 12 4 1 0   5 1.16 1.16 15.5 -0.79 -0.27 2.8 63 0 0 1 1 2 1 0   6 1.24 1.34 15.5 -0.99 -0.01 13.1 60 2 0 0 1 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.